Publications

2025

• Brasier CM, Grünwald NJ, Bourret T, Govers F, Scanu B, Cooke DEL, Bose T, Hawksworth DL, …† , Evangelisti E, …, Jung T (2025). Preserving the biologically coherent generic concept of Phytophthora, ’plant destroyer’. Phytopath. 115(6):573-586. https://doi.org/10.1094/PHYTO-11-24-0372-LE † : subsequent authors are listed alphabetically in this community manuscript.
• Cohen C., Gauci F.X., Noblin X., Galiana E., Attard A., Thomen P. (2025) Kinetics of zoospores approaching a root using a microfluidic device. Phys. Rev. E 111, 024411 – Published 26 February, 2025. https://doi.org/10.1103/PhysRevE.111.024411
• Galiana E., Kuhn M.-L., Attard A. (2025) Contractile Vacuole and Papilla drive Cyst/Telotroch transition in Vorticella microstoma. Preprint, doi : https://doi.org/10.1101/2025.03.06.641897.
• Kostareli MM, Westerink T, Couillaud G, Peippo M, Govers F, Weijers D, Evangelisti E (2025). Diversification of DIX domain-containing proteins in the SAR supergroup. mBio 16(5):e0396624. https://doi.org/10.1128/mbio.03966-24
• Lupatelli C.A., Seassau A., Magliano M., Kuhn M.-L., Rey A., Poet M., Counillon L., Evangelisti E., Thomen P., Attard A., Noblin X., Galiana E. (2025) Membrane proteome analysis  identifies key components of  sensing in Phytophthora parasitica  zoospores. Sci Rep. 15: 23500 https://doi.org/10.1038/s41598-025-08701-z

2024

• Evangelisti E, Govers F (2024). Roadmap to success: how oomycete plant pathogens invade tissues and deliver effectors. Annu Rev. Microbiol. 78:493–512 https://doi.org/10.1146/annurev-micro-032421-121423
• Huang WRH, Braam C, Kretschmer C, Villanueva SL, Liu H, Ferik F, van der Burgh AM, Wu J, Zhang L, Nürnberger T, Wang Y, Seidl MF, Evangelisti E, Stuttman J, Joosten MHAJ (2024). Receptor-like cytoplasmic kinases of different subfamilies differentially regulate SOBIR1/BAK1-mediated immune responses in Nicotiana benthamiana. Nat. Comm. 15(1):4339.https://doi.org/10.1038/s41467-024-48313-1
•  Jobe TO,  Gaspar Litholdo Jnr C,  Stolze SC,  Stephan L,  Westermann J,  Harzen A,  Hülskamp M,  Nakagami H,  Boisson-Dernier A (2024) An Omics approach on Marchantia polymorpha single FERONIA and MARIS homologs confirms links between cell wall integrity and abscisic acid. bioRxiv, https://doi.org/10.1101/2024.11.26.625412
• Li M, Boisson-Dernier A, Bertoldi D, Ardini F, Larcher R, Grotti M, Varotto CJ (2024) Elucidation of arsenic detoxification mechanism in Marchantia polymorpha: The role of ACR3. Hazard Mater 470:134088.https://doi.org/10.1016/j.jhazmat.2024.134088
• Riglet L, Hok S, Kebdani-Minet N, Le Berre J, Gourgues M, Rozier F, Bayle V, Bancel-Vallée L, Allasia V, Keller H, Da Rocha M, Attard A, Fobis-Loisy I (2024). Invasion of the stigma by oomycete pathogenic hyphae or pollen tubes : striking similarities and differences. J Exp Bot, doi.org/10.1093/jxb/erae308
• Somoza SC, Boccardo NA, Santin F, Sede AR, Wengier DL, Boisson-Dernier A, Muschietti JP (2024) Arabidopsis RALF4 Rapidly Halts Pollen Tube Growth by Increasing ROS and Decreasing Calcium Cytoplasmic Tip Levels. Biomolecules, 14:1375. https://doi.org/10.3390/biom14111375
• Testi S, Kuhn ML, Allasia V, Auroy P, Kong F, Peltier G, Pagnotta S, Cazareth J, Keller H, Panabières F (2024). The Phytophthora parasitica effector AVH195 interacts with ATG8, attenuates host autophagy, and promotes biotrophic infection. BMC Biol, doi.org/ 10.1186/s12915-024-01899-w
• Verhoeven T, Pluis MHJ, Peippo M, Couillaud G, van den Berg GCM, Evangelisti E (2024). LbCas12-mediated multiplex gene editing and 2-fluoroadenine counter-selection in Phytophthora palmivora. bioRxiv 2024.02.13.580060. https://doi.org/10.1101/2024.02.13.580060
• Yuen ELH, Tumtas Y, King F, Ibrahim T, Chan LI, Evangelisti E, Tulin F, Skłenar J, Menke FLH, Kamoun S, Bubeck D, Schornack S, Bozkurt TO (2024). A pathogen effector co-opts a host RabGAP protein to remodel pathogen interface and subvert defense-related secretion. Sci. Adv. 10(40): eado9516. https://doi.org/10.1126/sciadv.ado9516

2023

• Galli M, Jacob S, Zheng Y, Ghezellou P, Gand M, Albuquerque W, Imani J, Allasia V, Coustau C, Spengler B, Keller H, Thines E, Kogel K-H (2023). MIF-like domain containing protein orchestrates cellular differentiation and virulence in the fungal pathogen Magnaporthe oryzae. iScience, doi.org/10.1016/j.isci.2023.107565
•  Lupatelli C.A., Attard A., Kuhn M.-L., Cohen C., Thomen P., Noblin X., Galiana E. (2023) Automated high-content image-based characterization of microorganism behavioral diversity and distribution. Comput. Struct. Biotechnol. J. 21.2023, 5640-5649. https://doi.org/10.1016/j.csbj.2023.10.055

2022

• Giordano L, Schimmerling M, Panabières F, Allasia V, Keller H (2022). The exodomain of the impaired oomycete susceptibility 1 receptor mediates both endoplasmic reticulum stress responses and abscisic acid signalling during downy mildew infection of Arabidopsis. Mol Plant Pathol, doi.org/10.1111/mpp.13265
• Giordano L, Allasia V, Cremades A, Hok S, Panabieres F, Bailly-Maître B, Keller H. (2022). A plant receptor domain with functional analogies to animal malectin disables ER stress responses upon infection. iScience 25, 103877. https://doi.org/10.1016/j.isci.2022.103877
• Kuhn ML, Le Berre J, Kebdani-Minet N, Panabières F. (2022). Neofunctionalization of glycolytic enzymes: an evolutionary route to plant parasitism in the oomycete pathogen Phytophthora nicotianae. Microorganisms 10, 281. doi: 10.3390/microorganisms10020281.
• Tran QD, Galiana E, Thomen P, Cohen C, Orange F, Peruani F, Noblin X. (2022). Coordination of two opposite flagella allows high-speed swimming and active turning of individual zoospores. Elife Mar 28;11:e71227. doi: 10.7554/eLife.71227.

2021

• Fröschel C, Komorek J, Attard A, Marsell A, Lopez-Arboleda WA, Le Berre J, Wolf E, Geldner N, Waller F, Korte A, Dröge-Laser W. (2020). Plant roots employ cell-layer-specific programs to respond to pathogenic and beneficial microbes. Cell Host Microbe S1931-3128(20)30636-3.doi: 10.1016/j.chom.2020.11.014.
• Gruner K, Leissing F, Sinitski D, Thieron H, Axstmann C, Baumgarten K, Reinstädler A, Winkler P, Altmann M, Flatley A, Jaouannet M, Zienkiewicz K, Feussner I, Keller H, Coustau C, Falter-Braun P, Feederle R, Bernhagen J, Panstruga R. (2021). Chemokine-like MDL proteins modulate flowering time and innate immunity in plants. J Biol Chem 296:100611. doi: 10.1016/j.jbc.2021.100611.
• Hannat S, Pontarotti P, Colson P, Kuhn ML, Galiana E, La Scola B, Aherfi S, Panabières F. (2021). Diverse Trajectories Drive the Expression of a Giant Virus in the Oomycete Plant Pathogen Phytophthora parasitica. Front Microbiol 12: 1396. 10.3389/fmicb.2021.662762.
• Mei X, Wang Y, Li Z, Larousse M, Pere A, da Rocha M, Zhan F, He Y, Pu L, Panabières F, Zu Y. Root-associated microbiota drive phytoremediation strategies to lead of Sonchus Asper (L.) Hill as revealed by intercropping-induced modifications of the rhizosphere microbiome. Env Sci Poll Res Internat 10.1007/s11356-021-17353-1.
• Tran Q, Galiana E, Thome P, Cohen C, Orange F, Peruani F, Noblin X. (2021). Cooperation of two opposite flagella allows high-speed swimming and active turning in zoospores. BioRxiv 10.1101/2021.04.23.441092.

2020

• Lebeaupin C, Blanc M, Vallée D, Keller H, Bailly-Maitre B (2020). BAX inhibitor-1: between stress and survival. FEBS J. 287, 1722-1736.
• Fröschel C, Komorek J, Attard A, Marsell A, Lopez-Arboleda WA, Le Berre J, Wolf E, Geldner N, Waller F, Korte A, Dröge-Laser W. (2020). Plant roots employ cell-layer-specific programs to respond to pathogenic and beneficial microbes. Cell host Microbe S1931-3128(20)30636-3.doi: 10.1016/j.chom.2020.11.014.
• Bassani I, Larousse M, Tran QD, Attard A, Galiana E. (2020). Phytophthora zoospores: From perception of environmental signals to inoculum formation on the host-root surface.Comput Struct Biotechnol J 18:3766-3773. doi: 10.1016/j.csbj.2020.10.045. eCollection 2020.
• Bassani I, Rancurel C, Pagnotta S, Orange F, Pons N, Lebrigand K, Panabières F, Counillon L, Noblin X, Galiana E. (2020). Transcriptomic and ultrastructural signatures of K⁺-induced aggregation in Phytophthora parasitica zoospores. Microorganisms 8:1012. doi: 10.3390/microorganisms8071012.
• Panabières F, Rancurel C, da Rocha M, Kuhn ML. (2020). Characterization of two satellite DNA families in the genome of the oomycete plant pathogen Phytophthoraparasitica. Front Genet 11:557. doi: 10.3389/fgene.2020.00557. eCollection 2020.
• Jaouannet M, Pavaux AS, Pagnotta S, Pierre O, Michelet C, Marro S, Keller H, Lemée R, Coustau C. (2020). Atypical Membrane-Anchored Cytokine MIF in a Marine Dinoflagellate. Microorganisms. 8(9):1263. doi: 10.3390/microorganisms8091263.
• Castilleux R, Plancot B, Gügi B, Attard A, Loutelier-Bourhis C, Lefranc B, Nguema-Ona E, Arkoun M, Yvin JC, Driouich A, Vicré M. (2020). Extensin arabinosylation is involved in root response to elicitors and limits oomycete colonization. Ann Bot 125(5):751-763.doi: 10.1093/aob/mcz068.

2019

• Michelet C, Danchin EGJ, Jaouannet M, Bernhagen J, Panstruga R, Kogel KH, Keller H, Coustau C. (2019). Cross-Kingdom Analysis of Diversity, Evolutionary History, and Site Selection within the Eukaryotic Macrophage Migration Inhibitory Factor Superfamily. Genes 10:740. doi: 10.3390/genes10100740.
• Testi, S., Kuhn, M-L., Allasia, V., Auroy, P., Kong, F., Peltier, G., Pagnotta, S., Cazareth, J. Keller, H., Panabières, F. (2019). An oomycete effector impairs autophagy in evolutionary distant organisms and favors host infection. BioRxiv 697136. DOI: 10.1101/697136.
• Galiana, E., Cohen, C., Thomen, P. Etienne, C., and Noblin, X. (2019). Guidance of zoospores by potassium gradient sensing mediates aggregation. J. R. Soc. Interface 20190367. DOI: 10.1098/rsif.2019.0367.

2018

• Allasia, V., Industri, B., Ponchet, M., Quentin, M., Favery, B., and Keller, H. (2018). Quantification of Salicylic Acid (SA) and SA-glucosides in Arabidopsis thaliana. BIO-PROTOCOL 8. DOI: 10.21769/BioProtoc.2844
• Galiana, E., Cohen, C., Thomen, P., Mura, C., and Noblin, X. (2018). Guidance of zoospores by potassium gradient sensing mediates aggregation. BioRxiv 470864. DOI: 10.1101/470864

2017

• Larousse, M., Rancurel, C., Syska, C., Palero, F., Etienne, C., Industri, B., Nesme, X., Bardin, M., and Galiana, E. (2017). Tomato root microbiota and Phytophthora parasitica-associated disease. Microbiome 5, 56. DOI: 10.1186/s40168-017-0273-7
• Larousse M, Galiana E (2017) Microbial Partnerships of Pathogenic Oomycetes. PLoS Pathog 13(1): e1006028. doi:10.1371/journal.ppat.1006028
• Le Berre, J.-Y., Gourgues, M., Samans, B., Keller, H., Panabières, F., and Attard, A. (2017). Transcriptome dynamic of Arabidopsis roots infected with Phytophthora parasitica identifies VQ29, a gene induced during the penetration and involved in the restriction of infection. PLOS ONE 12, e0190341.

2016

• Hanemian, M., Barlet, X., Sorin, C., Yadeta, K.A., Keller, H., Favery, B., Simon, R., Thomma, B.P.H.J., Hartmann, C., Crespi, M., et al. (2016). Arabidopsis CLAVATA1 and CLAVATA2 receptors contribute to Ralstonia solanacearum pathogenicity through a miR169-dependent pathway. TheNew Phytologist DOI: 10.1111/nph.13913
• Panabières F, Ali GS, Allagui MB, Dalio RJD, Gudmestad NC, Kuhn ML, Guha Roy S, Schena L, Zampounis A (2016). Phytophthora nicotianae diseases worldwide: new knowledge of a long-recognized pathogen. Phytopathologia Mediterranea  55, 20-40.
• Quentin M, Baurès I, Hoefle C, Caillaud MC, Allasia V, Panabières F, Abad P, Hückelhoven R, Keller H, Favery B (2016).  The Arabidopsis microtubule-associated protein MAP65-3 supports infection by filamentous biotrophic pathogens by down-regulating salicylic acid-dependent defenses.  Journal of Experimental Botany, 67(6):1731-43. PMID: 26798028
• Keller H, Boyer L, Abad P (2016). Disease susceptibiliy in the zig-zag model of host-microbe Interactions: Only a consequence of immune suppression? Molecular Plant Pathology, PMID: 26788791

2015

• Naessens, E., Dubreuil, G., Giordanengo, P., Baron, O.L., Minet-Kebdani, N., Keller, H., and Coustau, C. A Secreted MIF Cytokine Enables Aphid Feeding and Represses Plant Immune Responses. Current Biology. Published Online: June 25, 2015. DOI: 10.1016/j.cub.2015.05.047
• Rodiuc, N., Barlet, X., Hok, S., Perfus-Barbeoch, L., Allasia, V., Engler, G., Séassau, A., Marteu, N., de Almeida-Engler, J., Panabières, F., et al. (2015). Evolutionarily distant pathogens require the Arabidopsis phytosulfokine signalling pathway to establish disease. Plant Cell Environ. DOI: 10.1111/pce.12627

2014

• Attard, A., Evangelisti, E., Kebdani-Minet, N., Panabières, F., Deleury, E., Maggio, C., Ponchet, M., and Gourgues, M. (2014). Transcriptome dynamics of Arabidopsis thaliana root penetration by the oomycete pathogen Phytophthora parasitica. BMC Genomics 15, 538.
• Hok, S., Allasia, V., Andrio, E., Naessens, E., Ribes, E., Panabières, F., Attard, A., Ris, N., Clément, M., Barlet, X., Marco, Y., Grill, E. Eichmann, R., Weis, C., Hückelhoven, R., Ammon, A., Ludwig-Müller, J., Voll, L. M., Keller, H. (2014). The Receptor Kinase IMPAIRED OOMYCETE SUSCEPTIBILITY 1 Attenuates Abscisic Acid Responses in Arabidopsis thaliana. Plant Physiology pp.114.248518. DOI : 10.1104/pp.114.248518
• Kamoun, S., Furzer O, Jones JD, Judelson HS, Ali GS, Dalio RJ, Roy SG, Schena L, Zambounis A, Panabières F, Cahill D, Ruocco M, Figueiredo A, Chen XR, Hulvey J, Stam R, Lamour K, Gijzen M, Tyler BM, Grünwald NJ, Mukhtar MS, Tomé DF, Tör M, Van den Ackerveken G, McDowell J, Daayf F, Fry WE, Lindqvist-Kreuze H, Meijer HJ, Petre B, Ristaino J, Yoshida K, Birch PR, Govers F. (2014). The Top 10 oomycete pathogens in molecular plant pathology. Molecular Plant Pathology 16(4):413-34.
• Larousse, M., Govetto, B., Séassau, A., Etienne, C., Industri, B., Theodorakopoulos, N., Deleury, E., Ponchet, M., Panabières, F., and Galiana, E. Characterization of PPMUCL1/2/3, Three Members of a New Oomycete-specific Mucin-like Protein Family Residing in Phytophthora parasitica Biofilm. Protist. 165: 275-92.

2013

• Baron, O.L., van West, P., Industri, B., Ponchet, M., Dubreuil, G., Gourbal, B., Reichhart, J.-M., and Coustau, C. (2013). Parental Transfer of the Antimicrobial Protein LBP/BPI Protects Biomphalaria glabrata Eggs against Oomycete Infections. PLoS Pathogen 9, e1003792.
• Evangelisti, E., Govetto, B., Minet-Kebdani, N., Kuhn, M.-L., Attard, A., Ponchet, M., Panabières, F., and Gourgues, M. (2013). The Phytophthora parasitica RXLR effector penetration-specific effector 1 favours Arabidopsis thaliana infection by interfering with auxin physiology. New Phytologist 199, 476–489.
• Jaouannet M., Magliano M., Arguel M.J., Gourgues M., Evangelisti E., Abad P., Rosso M.N. (2013). The root-knot nematode calreticulin Mi-CRT is a key effector in plant defense suppression. Molecular Plant-Microbe Interactions 26: 97-105.
• Koch A, Kumar N, Weber L, Keller H, Imani J, Kogel K-H (2013). Host-induced gene silencing of cytochrome P450 lanosterol C14α-demethylase-encoding genes confers strong resistance to Fusarium species.Proc Natl Acad Sci USA 110: 19324-9.
• Kuhn, M.-L. et al.(2013) Methods for controlling Phytophthora in vegetable crops: inputs from microbial core collection in the plant breeding process. Innovations Agronomiques 27, 47–58.
• Mosher S., Seybold H., Rodriguez P., Stahl M., Davies KA., Dayaratne S., Morillo S., Wierzba M., Favery B., Keller H., Tax F.E., Kemmerling B. (2013). The Tyrosine-sulfated peptide receptors PSKR1 and PSY1R modify Arabidopsis immunity to biotrophic and necrotrophic pathogens in an antagonistic manner. The Plant Journal 73: 469-482.

2012

• Coustau, C., Baron, O., Reichhart, J-M., Ponchet, M. (2012). Brevet N° FR 1200492. Activité anti-oomycètes des lipopolysaccharides (LPS)-Binding proteins. International extension in progress.
• Reitz M.U., Bissue J.K., Zocher K., Attard A., Hückelhoven R., Becker K., Imani J., Eichmann R., Schäfer P. (2012). The subcellular localization of Tubby-like proteins and participation in stress signaling and root colonization by the mutualist Piriformospora indica. Plant Physiology 160:349-364.
• Rodiuc N, Marco Y, Favery B, Keller H (2012). Brevet N° WO/2012/017067. Plants resistant to pathogens and methods for production thereof.