Séminaire scientifique

Functional insights from the GC-poor genomes of two aphid parasitoids

Functional insights from the GC-poor genomes of two aphid parasitoids, Aphidius ervi and Lysiphlebus fabarum

31 décembre 2017

Sophia Antipolis - Inra PACA - Salle A010

Dans le cadre de l'animation scientifique Jean-Luc Gatti , équipe ESIM, nous présentera Vendredi 13 Mars à 11h, en salle A010, un article dans lequel plusieurs membres de l'équipe ont participé


The presented paper will present the de novo genome assemblies, detailed annotation, and comparative analysis of two closely related parasitoid wasps that target pest aphids: Aphidius ervi and Lysiphlebus fabarum (Hymenoptera: Braconidae: Aphidiinae). The genomes are small (139 and 141 Mbp), highly syntenic, and the most AT-rich reported thus far for any arthropod (GC content: 25.8% and 23.8%). This nucleotide bias is accompanied by skewed codon usage and is stronger in genes with adult-biased expression. AT-richness may be the consequence of reduced genome size, a near absence of DNA methylation, and energy efficiency. We identify missing desaturase genes, whose absence may underlie mimicry in the cuticular hydrocarbon profile of L. fabarum. We also find that absence of some immune genes (Toll and Imd pathways) resembles similar losses in their aphid hosts, highlighting the potential impact of symbiosis on both aphids and their parasitoids.

Contact: changeMe@inrae.fr

Date de création : 13 septembre 2023