En savoir plus

IR CNRS - Ingénieur de Recherche - Bioinformaticienne

2024

• [PP] Poullet, Marine, Hemanth Gopal, Corinne Rancurel, Marine Sallaberry, Celine Lopez-Roques, Joanna Lledo, Sebastian Kiewnick, et Etienne Danchin. 2024. « Unveiling the Genome Assembly of the Polyploid and Quarantine Root-Knot Nematode, Meloidogyne Enterolobii ». [[ preprint ]]. doi: 10.1101/2024.03.01.582926
• [32] Zotta Mota, Ana-Paula, Georgios D. Koutsovoulos, Laetitia Perfus-Barbeoch, Evelin Despot-Slade, Karine Labadie, Jean-Marc Aury, Karine Robbe-Sermesant, Marc Bailly-Bechet, Caroline Belser, Arthur Péré, Corinne Rancurel, Djampa K. Kozlowski, Rahim Hassanaly-Goulamhoussen, Martine Da Rocha, Benjamin Noël, Nevenka Mestrovic-Radan, Patrick Wincker, et Etienne Gj Danchin. 2023. «  Unzipped Assemblies of Polyploid Root-Knot Nematode Genomes Reveal New Kinds of Unilateral Composite Telomeric Repeats ». Nature Communications 15(1):773. doi: 10.1038/s41467-024-44914-y

2023

• [31] Elena Bovio ^#, Corinne Rancurel ^#, Aurelie Seassau, Marc Magliano, Marie Gislard, Anais Loisier, Claire Kuchly, Michel Ponchet, Etienne GJ Danchin, Cyril Van Ghelder. [ ^# equal contribution ]. (2023). Genome sequence and annotation of Periconia digitata, a hopeful biocontrol agent of phytopathogenic oomycetes. Sci Data. 10, 583, 2023. https://doi.org/10.1038/s41597-023-02440-4
• [30] Martina Zapletalová ^#, Corinne Rancurel ^#, Benoit Industri, Marc Bardin, Kevin Le Brigand, Philippe Nicot, Virginie Magnone, Aurélie Seassau, Pascal Barbry, David Potěšil, Zbyněk Zdráhal, Michel Ponchet, Jan Lochman. [ ^# equal contribution ]. (2023). BABA-induced pathogen resistance: a multi-omics analysis of the tomato response reveals a hyper-receptive status involving ethylene, Horticulture Research. uhad068. https://doi.org/10.1093/hr/uhad068

2022

• [29] Georgios D. Koutsovoulos, Solène Granjeon Noriot, Marc Bailly-Bechet, Etienne G. J. Danchin, Corinne Rancurel. AvP: a software package for automatic phylogenetic detection of candidate horizontal gene transfers.  PLOS Computational Biology 18(11):e1010686. (2022). https://doi.org/10.1371/journal.pcbi.1010686
• [28] Carole Belliardo, Georgios D. Koutsovoulos, Corinne Rancurel, Mathilde Clément, Justine Lipuma, Marc Bailly-Bechet, Etienne G.J. Danchin. Improvement of eukaryotic protein predictions from soil metagenomes. Sci Data 9, 311 (2022). https://doi.org/10.1038/s41597-022-01420-4

2020

• [27] Grynberg, P.; Coiti Togawa, R.; Dias de Freitas, L.; Antonino, J.D.; Rancurel, C.; Mota do Carmo Costa, M.; Grossi-de-Sa, M.F.; Miller, R.N.G.; Brasileiro, A.C.M.; Messenberg Guimaraes, P.; Danchin, E.G.J. Comparative Genomics Reveals Novel Target Genes Towards Specific Control of Plant-Parasitic Nematodes. Genes 2020, 11, 1347 (2020) . https://doi.org/10.3390/genes11111347
• [26] Bassani, I., Rancurel, C., Pagnotta, S., Orange, F., Pons, N., Lebrigand, K., Panabières, F., Counillon, L., Noblin, X., Galiana, E. Transcriptomic and Ultrastructural Signatures of K⁺-Induced Aggregation in Phytophthora parasitica Zoospores. Microorganisms 8, 1012 (2020). https://doi.org/10.3390/microorganisms8071012
• [25] Panabières, F.,Rancurel, C., Da Rocha, M., Kuhn, M. Characterization of Two Satellite DNA Families in the Genome of the Oomycete Plant Pathogen Phytophthora parasitica. Front. Genet. 11, 557 (2020). https://doi.org/10.3389/fgene.2020.00557

2019

• [24] Schiffer, P.H., Danchin, E.G.J., Burnell, A.M., Creevey, C.J., Wong, S., Dix, I., O’Mahony, G., Culleton, B.A.,Rancurel, C., Stier, G., Martínez-Salazar, E.A., Marconi, A., Trivedi, U., Kroiher, M., Thorne, M.A.S., Schierenberg, E., Wiehe, T., Blaxter, M. Signatures of the evolution of parthenogenesis and cryptobiosis in the genomes of panagrolaimid nematodes.; iScience (2019). https://doi.org/10.1016/j.isci.2019.10.039
• [23] Rancurel, C., van Tran, T., Elie, C., Hilliou, F. SATqPCR: Website for statistical analysis of real-time quantitative PCR data. Molecular and Cellular Probes. 46, 101418 (2019). https://doi.org/10.1016/j.mcp.2019.07.001
• [22] Marmonier, A., Perfus-Barbeoch, L., Rancurel, C., Boissinot, S., Favery, B., Demangeat, G., Brault, V. In Vitro Acquisition of Specific Small Interfering RNAs Inhibits the Expression of Some Target Genes in the Plant Ectoparasite Xiphinema index. International Journal of Molecular Sciences. 20, 3266 (2019). https://doi.org/10.3390/ijms20133266

2018

• [21] Pratx, L., Rancurel, C., Da Rocha, M., Danchin, E.G.J., Castagnone-Sereno, P., Abad, P., Perfus-Barbeoch, L. Genome-wide expert annotation of the epigenetic machinery of the plant-parasitic nematodes Meloidogyne spp., with a focus on the asexually reproducing species. BMC Genomics. 19, 321 (2018). https://doi.org/10.1186/s12864-018-4686-x
• [PP] Cottret, L., Briand, M., Rancurel, C., Carrere, S. Family-Companion: analyse, visualise, browse, query and share your homology clusters. Preprint bioRxiv. 266742 (2018). https://doi.org/10.1101/266742

2017

• [20] Rancurel, C., Legrand, L., Danchin, E.G.J. Alienness: Rapid Detection of Candidate Horizontal Gene Transfers across the Tree of Life. Genes. 8, 248 (2017). https://doi.org/10.3390/genes8100248
• [19] Larousse, M., Rancurel, C., Syska, C., Palero, F., Etienne, C., Industri, B., Nesme, X., Bardin, M., Galiana, E. Tomato root microbiota and Phytophthora parasitica-associated disease. Microbiome. 5, 56 (2017). https://doi.org/10.1186/s40168-017-0273-7
• [18] Danchin, E.G.J., Perfus-Barbeoch, L., Rancurel, C., Thorpe, P., Da Rocha, M., Bajew, S., Neilson, R., (Guzeeva), E.S., Da Silva, C., Guy, J., Labadie, K., Esmenjaud, D., Helder, J., Jones, J.T., Den Akker, S.E. The Transcriptomes of Xiphinema index and Longidorus elongatus Suggest Independent Acquisition of Some Plant Parasitism Genes by Horizontal Gene Transfer in Early-Branching Nematodes. Genes. 8, 287 (2017). https://doi.org/10.3390/genes8100287
• [17] Blanc-Mathieu, R., Perfus-Barbeoch, L., Aury, J.-M., Da Rocha, M., Gouzy, J., Sallet, E., Martin-Jimenez, C., Bailly-Bechet, M., Castagnone-Sereno, P., Flot, J.-F., Kozlowski, D.K., Cazareth, J., Couloux, A., Da Silva, C., Guy, J., Kim-Jo, Y.-J., Rancurel, C., Schiex, T., Abad, P., Wincker, P., Danchin, E.G.J. Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant-parasitic nematodes. PLoS Genet. 13, e1006777 (2017). https://doi.org/10.1371/journal.pgen.1006777

2016

• [16] Pratlong, M., Rancurel, C., Pontarotti, P., Aurelle, D. Monophyly of Anthozoa (Cnidaria): why do nuclear and mitochondrial phylogenies disagree? Zoologica Scripta. 46, 363–371 (2016). https://doi.org/10.1111/zsc.12208
• [15] Eves-van den Akker, S., Laetsch, D.R., Thorpe, P., Lilley, C.J., Danchin, E.G.J., Da Rocha, M., Rancurel, C., Holroyd, N.E., Cotton, J.A., Szitenberg, A., Grenier, E., Montarry, J., Mimee, B., Duceppe, M.-O., Boyes, I., Marvin, J.M.C., Jones, L.M., Yusup, H.B., Lafond-Lapalme, J., Esquibet, M., Sabeh, M., Rott, M., Overmars, H., Finkers-Tomczak, A., Smant, G., Koutsovoulos, G., Blok, V., Mantelin, S., Cock, P.J.A., Phillips, W., Henrissat, B., Urwin, P.E., Blaxter, M., Jones, J.T. The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence. Genome Biology. 17, 124 (2016). https://doi.org/10.1186/s13059-016-0985-1
• [14] Damiani, I., Drain, A., Guichard, M., Balzergue, S., Boscari, A., Boyer, J.-C., Brunaud, V., Cottaz, S., Rancurel, C., Da Rocha, M., Fizames, C., Fort, S., Gaillard, I., Maillol, V., Danchin, E.G.J., Rouached, H., Samain, E., Su, Y.-H., Thouin, J., Touraine, B., Puppo, A., Frachisse, J.-M., Pauly, N., Sentenac, H. Nod Factor Effects on Root Hair-Specific Transcriptome of Medicago truncatula: Focus on Plasma Membrane Transport Systems and Reactive Oxygen Species Networks. Front. Plant Sci. 7, (2016). https://doi.org/10.3389/fpls.2016.00794

2014

• [13] Pasquier, C., Clément, M., Dombrovsky, A., Penaud, S., Rocha, M.D., Rancurel, C., Ledger, N., Capovilla, M., Robichon, A. Environmentally Selected Aphid Variants in Clonality Context Display Differential Patterns of Methylation in the Genome. PLOS ONE. 9, e115022 (2014). https://doi.org/10.1371/journal.pone.0115022
• [12] Eves-van den Akker, S., Lilley, C.J., Danchin, E.G.J., Rancurel, C., Cock, P.J.A., Urwin, P.E., Jones, J.T. The Transcriptome of Nacobbus aberrans Reveals Insights into the Evolution of Sedentary Endoparasitism in Plant-Parasitic Nematodes. Genome Biol Evol. 6, 2181–2194 (2014). https://doi.org/10.1093/gbe/evu171

2010

• [11] Lombard, V., Bernard, T., Rancurel, C., Brumer, H., Coutinho, P.M., Henrissat, B. A hierarchical classification of polysaccharide lyases for glycogenomics. Biochem J. 432, 437–444 (2010). https://doi.org/10.1042/BJ20101185

2009

• [10] Romero, P.R., Rancurel, C., Khosravi, M., Dunker, A.K., Karlin, D. Intrinsic Disorder and the Evolution of Viral Overlapping Genes. Biophysical Journal. 96, 221a (2009). https://doi.org/10.1016/j.bpj.2008.12.1923
• [9] Rancurel, C., Khosravi, M., Dunker, A.K., Romero, P.R., Karlin, D. Overlapping Genes Produce Proteins with Unusual Sequence Properties and Offer Insight into De Novo Protein Creation. Journal of Virology. 83, 10719–10736 (2009). https://doi.org/10.1128/JVI.00595-09
• [8] Coutinho, P.M., Rancurel, C., Stam, M., Bernard, T., Couto, F.M., Danchin, E.G.J., Henrissat, B. Carbohydrate-Active Enzymes Database: Principles and Classification of Glycosyltransferases. In: Bioinformatics for Glycobiology and Glycomics. pp. 89–118. John Wiley & Sons, Ltd (2009) https://onlinelibrary.wiley.com/doi/abs/10.1002/9780470029619.ch5
• [7] Cantarel, B.L., Coutinho, P.M., Rancurel, C., Bernard, T., Lombard, V., Henrissat, B. The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics. Nucleic Acids Res. 37, D233–D238 (2009). https://doi.org/10.1093/nar/gkn663

2008

• [6] Weiner, R.M., Ii, L.E.T., Henrissat, B., Hauser, L., Land, M., Coutinho, P.M., Rancurel, C., Saunders, E.H., Longmire, A.G., Zhang, H., Bayer, E.A., Gilbert, H.J., Larimer, F., Zhulin, I.B., Ekborg, N.A., Lamed, R., Richardson, P.M., Borovok, I., Hutcheson, S. Complete Genome Sequence of the Complex Carbohydrate-Degrading Marine Bacterium, Saccharophagus degradans Strain 2-40T. PLOS Genetics. 4, e1000087 (2008). https://doi.org/10.1371/journal.pgen.1000087
• [5] Levasseur, A., Piumi, F., Coutinho, P.M., Rancurel, C., Asther, M., Delattre, M., Henrissat, B., Pontarotti, P., Asther, M., Record, E. FOLy: An integrated database for the classification and functional annotation of fungal oxidoreductases potentially involved in the degradation of lignin and related aromatic compounds. Fungal Genetics and Biology. 45, 638–645 (2008). https://doi.org/10.1016/j.fgb.2008.01.004

2006

• [4] Stam, M.R., Danchin, E.G.J., Rancurel, C., Coutinho, P.M., Henrissat, B. Dividing the large glycoside hydrolase family 13 into subfamilies: towards improved functional annotations of α-amylase-related proteins. Protein Eng Des Sel. 19, 555–562 (2006). https://doi.org/10.1093/protein/gzl044

2005

• [3] Ferron, F.^#, Rancurel, C.^#, Longhi, S., Cambillau, C., Henrissat, B., Canard, B. VaZyMolO: a tool to define and classify modularity in viral proteins. Journal of General Virology,. 86, 743–749 (2005). https://doi.org/10.1099/vir.0.80590-0  [ ^#  equal contribution]

2004

• [2] Egloff, M.-P., Ferron, F., Campanacci, V., Longhi, S., Rancurel, C., Dutartre, H., Snijder, E.J., Gorbalenya, A.E., Cambillau, C., Canard, B. The severe acute respiratory syndrome-coronavirus replicative protein nsp9 is a single-stranded RNA-binding subunit unique in the RNA virus world. PNAS. 101, 3792–3796 (2004). https://doi.org/10.1073/pnas.0307877101
  • PDB Entry - 1QZ8 : Crystal structure of SARS coronavirus NSP9. doi:10.2210/pdb1qz8/pdb

2003

• [1] Campanacci, V., Egloff, M.-P., Longhi, S., Ferron, F., Rancurel, C., Salomoni, A., Durousseau, C., Tocque, F., Brémond, N., Dobbe, J.C., Snijder, E.J., Canard, B., Cambillau, C. Structural genomics of the SARS coronavirus: cloning, expression, crystallization and preliminary crystallographic study of the Nsp9 protein. Acta Cryst D. 59, 1628–1631 (2003). https://doi.org/10.1107/S0907444903016779

Email : corinne.rancurel@inrae.fr